Basic Information
Locus ID:
gene-QOZ80_5AG0376420
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 11961943 | 11962509 | - | gene-QOZ80_5AG0376420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 19,886.87 Da | 46.90 | 67.71 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 115 | 158 | 6.51209E-17 | - |
| Pfam | PF13639 | Ring finger domain | 115 | 158 | 6.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 115 | 171 | 1.44E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 74 | 162 | 3.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 116 | 157 | 1.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 116 | 158 | 12.681067 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 88 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47560.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020398258.1 | RING-H2 finger protein ATL64 [Zea mays] | 0 |
| O22255 | RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811RQY0 | RING-type domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS55726 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology