Basic Information
Locus ID:
gene-QOZ80_5AG0375470
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Ribosome inactivating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 10977863 | 10978801 | - | gene-QOZ80_5AG0375470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.20 | 34,826.41 Da | 48.37 | 94.78 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 33 | 225 | 2.8E-35 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 28 | 250 | 1.96E-39 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 13 | 186 | 1.3E-34 | IPR016138 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 176 | 196 | 5.0E-14 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 143 | 157 | 5.0E-14 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 85 | 100 | 5.0E-14 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 33 | 46 | 5.0E-14 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 211 | 228 | 5.0E-14 | IPR017989 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002463678.1 | protein synthesis inhibitor II [Sorghum bicolor] | 0 |
| P33183 | Nigrin b OS=Sambucus nigra OX=4202 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2T7EEH8 | rRNA N-glycosylase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G291500 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology