Basic Information
Locus ID:
gene-QOZ80_5AG0375060
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 10538758 | 10539672 | + | gene-QOZ80_5AG0375060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 34,628.75 Da | 63.81 | 77.60 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 110 | 156 | 3.6E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 102 | 182 | 7.85E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 101 | 189 | 3.2E-8 | - |
| SMART | SM00256 | fbox_2 | 112 | 155 | 0.0016 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 106 | 155 | 9.868391 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 304 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002467378.1 | uncharacterized protein LOC8083603 [Sorghum bicolor] | 0 |
| TrEMBL | A0A5J9U6H0 | F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_35332 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH01.2957, CH01.3154 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0034520, gene-QOZ80_5AG0375060 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G194300 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G021480, Chr02G008650, Chr05G024830, Chr08G017020 ... |
| Poaceae | Zea mays | 2 | Zm00001eb224500_P001, Zm00001eb224510_P001 |
| Poaceae | Zoysia japonica | 5 | nbis-gene-23678, nbis-gene-23679, nbis-gene-23680 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g28150, Zma_g28151 |