Basic Information
Locus ID:
gene-QOZ80_5AG0374180
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 9682746 | 9685157 | + | gene-QOZ80_5AG0374180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 40,167.80 Da | 73.57 | 64.97 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 304 | 344 | 1.36012E-26 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 303 | 349 | 1.5E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 304 | 350 | 1.08E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 286 | 354 | 1.8E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 305 | 343 | 6.0E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 305 | 344 | 11.279532 | IPR001841 |
| PRINTS | PR01217 | Proline rich extensin signature | 10 | 22 | 1.6E-9 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 30 | 51 | 1.6E-9 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 79 | 96 | 1.6E-9 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 58 | 74 | 1.6E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 45 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039838464.1 | probable E3 ubiquitin-protein ligase LUL4 [Panicum virgatum] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0V4E2 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_3KG262561 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology