Basic Information
Locus ID:
gene-QOZ80_5AG0374010
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Chitinase class I
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 9539795 | 9540896 | + | gene-QOZ80_5AG0374010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 35,705.55 Da | 37.50 | 58.46 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 90 | 321 | 1.01489E-112 | - |
| CDD | cd06921 | ChtBD1_GH19_hevein | 30 | 68 | 4.00426E-18 | - |
| Pfam | PF00187 | Chitin recognition protein | 31 | 68 | 9.9E-13 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 89 | 321 | 2.7E-128 | IPR000726 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 86 | 328 | 7.59E-105 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 31 | 78 | 5.24E-12 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 94 | 327 | 1.2E-116 | - |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 173 | 230 | 1.2E-116 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 29 | 71 | 4.6E-15 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 31 | 68 | 3.3E-16 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 4 | 328 | 3.1E-123 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 29 | 70 | 10.870915 | IPR001002 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 107 | 129 | - | IPR000726 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 234 | 244 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 47 | 54 | 1.3E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 54 | 61 | 1.3E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 39 | 47 | 1.3E-5 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | NP_001150560.1 | Chitinase 2 precursor [Zea mays] | 0 |
| Q7DNA1 | Chitinase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Cht2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9RZ79 | chitinase OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology