Basic Information
Locus ID:
gene-QOZ80_4BG0360280
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 48998811 | 49008011 | - | gene-QOZ80_4BG0360280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 54,092.15 Da | 52.84 | 85.54 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 235 | 283 | 1.16585E-14 | - |
| Pfam | PF12906 | RING-variant domain | 235 | 282 | 2.0E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 231 | 286 | 3.4E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 222 | 290 | 3.2E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 234 | 283 | 8.8E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 227 | 289 | 19.546707 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 488 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004974976.1 | uncharacterized protein LOC101774528 [Setaria italica] | 0 |
| TrEMBL | A0A5J9T613 | RING-CH-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_46879 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology