Basic Information
Locus ID:
gene-QOZ80_4BG0350150
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 15357440 | 15364340 | - | gene-QOZ80_4BG0350150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 46,243.75 Da | 30.23 | 86.44 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 1 | 288 | 7.7E-83 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 1 | 344 | 5.76E-117 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 1 | 357 | 2.1E-134 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 1 | 404 | 9.5E-203 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 226 | 236 | 2.0E-22 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 140 | 155 | 2.0E-22 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 108 | 131 | 2.0E-22 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 65 | 82 | 9.2E-56 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 204 | 222 | 9.2E-56 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 1 | 18 | 9.2E-56 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 187 | 200 | 9.2E-56 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 86 | 106 | 9.2E-56 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 34 | 52 | 9.2E-56 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 127 | 143 | 9.2E-56 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 405 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44680.1 | histone deacetylase 9. Class I RPD3 type protein | 0 |
| RefSeq | XP_039772753.1 | histone deacetylase 9 isoform X5 [Panicum virgatum] | 0 |
| Q8H0W2 | Histone deacetylase 9 OS=Arabidopsis thaliana OX=3702 GN=HDA9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811QRD0 | Histone deacetylase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS44447 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology