HalophFGD

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Basic Information
Locus ID: gene-QOZ80_4BG0348850
Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504
Genome Assembly: GCA_032690845.1
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
chr4B 13835410 13836702 + gene-QOZ80_4BG0348850
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.65 34,087.20 Da 47.94 82.89 -0.29
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF12937 F-box-like 26 62 1.3E-6 IPR001810
SUPERFAMILY SSF81383 F-box domain 24 77 3.27E-7 IPR036047
Gene3D G3DSA:1.20.1280.50 - 19 67 2.9E-6 -
ProSiteProfiles PS50181 F-box domain profile. 23 62 9.232525 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_015611413.1 uncharacterized protein LOC4346729 [Oryza sativa Japonica Group] 0
TrEMBL K3ZC56 F-box domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 5 AH05.3855, AH05.3915, BH05.3927, CH05.4131, CH05.4136
Poaceae Eleusine coracana subsp. coracana 3 gene-QOZ80_4BG0348850, gene-QOZ80_5AG0395480 ...
gene-QOZ80_5BG0443800
Poaceae Paspalum vaginatum 3 gene-BS78_08G118600, gene-BS78_08G119600 ...
gene-BS78_08G145600
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.