Basic Information
Locus ID:
gene-QOZ80_4BG0342490
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
AN1-like Zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 8828743 | 8829321 | - | gene-QOZ80_4BG0342490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 21,654.38 Da | 56.57 | 53.44 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01754 | A20-like zinc finger | 32 | 54 | 1.9E-10 | IPR002653 |
| SUPERFAMILY | SSF118310 | AN1-like Zinc finger | 120 | 186 | 9.42E-20 | IPR035896 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 34 | 70 | 7.27E-10 | - |
| Gene3D | G3DSA:1.20.5.4770 | - | 18 | 78 | 1.0E-14 | - |
| Gene3D | G3DSA:4.10.1110.10 | - | 104 | 187 | 3.9E-17 | IPR035896 |
| SMART | SM00259 | A20_3 | 31 | 55 | 4.4E-7 | IPR002653 |
| SMART | SM00154 | AN1_Zf_4 | 131 | 169 | 5.9E-4 | IPR000058 |
| ProSiteProfiles | PS51036 | Zinc finger A20-type profile. | 28 | 62 | 9.365689 | IPR002653 |
| ProSiteProfiles | PS51039 | Zinc finger AN1-type profile. | 128 | 172 | 10.313158 | IPR000058 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12040.1 | A20/AN1-like zinc finger family protein. | 0 |
| RefSeq | XP_025815336.1 | zinc finger A20 and AN1 domain-containing stress-associated protein 3-like [Panicum hallii] | 0 |
| Q9SZ69 | Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Arabidopsis thaliana OX=3702 GN=SAP7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835E1A1 | Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Digitaria exilis OX=1010633 GN=HU200_059410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_1AG0034460, gene-QOZ80_1AG0034540 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr05G024780, Chr05G024860 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11828 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8729 |