Basic Information
Locus ID:
gene-QOZ80_4BG0340880
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 7720561 | 7725065 | - | gene-QOZ80_4BG0340880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 85,322.79 Da | 60.09 | 69.22 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 455 | 492 | 2.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 414 | 449 | 2.0E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 341 | 3.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 589 | 626 | 0.065 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 306 | 630 | 5.83E-55 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 296 | 657 | 1.1E-60 | IPR015943 |
| SMART | SM00320 | WD40_4 | 303 | 342 | 8.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 549 | 585 | 62.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 533 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 412 | 450 | 3.0E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 586 | 627 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 453 | 492 | 9.8E-10 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 459 | 495 | 10.68014 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 419 | 459 | 13.315579 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 419 | 453 | 10.337415 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 310 | 344 | 11.339228 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 310 | 351 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 459 | 501 | 13.048234 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 329 | 343 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 437 | 451 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 329 | 343 | 1.2E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 479 | 493 | 1.2E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 221 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15470.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_039819413.1 | WD repeat-containing protein 44-like [Panicum virgatum] | 0 |
| Q498F0 | WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0PYJ2 | WD_REPEATS_REGION domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_7NG336700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology