Basic Information
Locus ID:
gene-QOZ80_4BG0340870
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 7707738 | 7717069 | - | gene-QOZ80_4BG0340870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 105,599.90 Da | 51.86 | 79.59 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 251 | 361 | 2.3E-6 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 708 | 768 | 1.7E-7 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 829 | 899 | 7.94E-8 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 128 | 387 | 3.3E-20 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 707 | 768 | 4.8E-12 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 128 | 410 | 3.1E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 707 | 786 | 4.3E-9 | - |
| SMART | SM00358 | DRBM_3 | 829 | 894 | 0.17 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 705 | 769 | 3.0E-7 | IPR014720 |
| SMART | SM00577 | forpap2 | 195 | 370 | 8.1E-10 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 733 | 770 | 11.358473 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 134 | 386 | 16.685835 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 552 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_039774792.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Panicum virgatum] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TUM5 | protein-serine/threonine phosphatase OS=Eragrostis curvula OX=38414 GN=EJB05_38612 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology