Basic Information
Locus ID:
gene-QOZ80_4BG0338650
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 6377025 | 6381230 | - | gene-QOZ80_4BG0338650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 97,002.24 Da | 43.02 | 82.98 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 804 | 845 | 1.73185E-22 | - |
| CDD | cd01989 | STK_N | 38 | 197 | 8.11007E-44 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 517 | 767 | 1.7E-36 | IPR001245 |
| Pfam | PF04564 | U-box domain | 800 | 868 | 1.2E-18 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 490 | 767 | 3.96E-63 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 796 | 869 | 1.77E-23 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 38 | 168 | 3.85E-7 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 27 | 171 | 4.9E-12 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 491 | 584 | 6.1E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 585 | 794 | 4.4E-45 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 799 | 869 | 6.3E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 803 | 866 | 2.0E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 799 | 869 | 32.22665 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 512 | 779 | 31.834728 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 518 | 539 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 303 | - | - |
| Coils | Coil | Coil | 401 | 421 | - | - |
| Coils | Coil | Coil | 450 | 477 | - | - |
| Coils | Coil | Coil | 352 | 386 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_035821098.1 | U-box domain-containing protein 33 [Zea mays] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A811QGP8 | RING-type E3 ubiquitin transferase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS43444 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology