Basic Information
Locus ID:
gene-QOZ80_4BG0338050
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 5875661 | 5879736 | + | gene-QOZ80_4BG0338050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 41,663.20 Da | 63.24 | 87.31 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 322 | 366 | 2.43724E-20 | - |
| Pfam | PF13639 | Ring finger domain | 322 | 364 | 6.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 312 | 369 | 7.54E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 377 | 8.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 323 | 363 | 5.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 323 | 364 | 12.651561 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 173 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63170.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_004976528.1 | E3 ubiquitin-protein ligase At1g63170 [Setaria italica] | 0 |
| Q8LDB8 | E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g63170 PE=2 SV=2 | 0 | |
| TrEMBL | K3Y812 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101770623 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology