Basic Information
Locus ID:
gene-QOZ80_4BG0337670
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 5612541 | 5616081 | - | gene-QOZ80_4BG0337670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 35,144.36 Da | 52.30 | 62.84 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 13 | 184 | 3.4E-79 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 5 | 107 | 1.7E-42 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 109 | 182 | 1.7E-34 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 304 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_025826441.1 | ubiquitin fusion degradation protein 1 homolog [Panicum hallii] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2T7CYZ7 | Ubiquitin fusion degradation protein 1 homolog OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G254400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology