Basic Information
Locus ID:
gene-QOZ80_4BG0337430
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 5465077 | 5465652 | + | gene-QOZ80_4BG0337430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 20,225.89 Da | 70.14 | 100.26 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 119 | 165 | 2.87582E-8 | - |
| Pfam | PF13639 | Ring finger domain | 118 | 165 | 4.2E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 112 | 171 | 3.53E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 172 | 4.9E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 119 | 164 | 2.8E-5 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 115 | 172 | 0.0019 | - |
| SMART | SM00744 | ringv_2 | 118 | 165 | 0.0014 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 119 | 165 | 12.238477 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G35330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | NP_001151016.2 | zinc finger, C3HC4 type family protein [Zea mays] | 0 |
| Q9C7I1 | RING-H2 finger protein ATL34 OS=Arabidopsis thaliana OX=3702 GN=ATL34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6FV20 | RING-H2 finger protein ATL34 OS=Zea mays OX=4577 GN=ATL34_4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g32340 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2041, BH09.2198, CH09.2347 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0306430, gene-QOZ80_4BG0337430 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_045732, gene-QYE76_064127 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g49170.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G197400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703590, Pt_Chr0703595 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr25G004870 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G677900 |
| Poaceae | Triticum aestivum | 2 | TraesCS2B02G413100.1.cds1, TraesCS2D02G392600.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb073040_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5640 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21839 |