Basic Information
Locus ID:
gene-QOZ80_4BG0336780
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 5056891 | 5057916 | + | gene-QOZ80_4BG0336780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 36,855.68 Da | 60.41 | 61.76 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 132 | 175 | 1.87376E-17 | - |
| Pfam | PF13639 | Ring finger domain | 132 | 175 | 1.9E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 126 | 181 | 2.59E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 181 | 1.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 133 | 174 | 5.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 133 | 175 | 12.961374 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 103 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03550.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004976649.1 | E3 ubiquitin-protein ligase Os04g0590900 [Setaria italica] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0A9CP95 | RING-type E3 ubiquitin transferase OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology