Basic Information
Locus ID:
gene-QOZ80_4BG0332740
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Short Name:
UBP6
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 2415872 | 2418501 | + | gene-QOZ80_4BG0332740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 25,709.58 Da | 39.88 | 75.51 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 71 | 210 | 5.8E-16 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 4 | 211 | 2.35E-34 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 1 | 223 | 1.3E-34 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 213 | 18.759613 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 149 | 167 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51710.2 | ubiquitin-specific protease 6. Ubiquitin-specific protease 6 (UBP6). Deubiquinating enzyme. Interacts with calmodulin. | 0 |
| RefSeq | XP_010231906.1 | ubiquitin carboxyl-terminal hydrolase 6 isoform X1 [Brachypodium distachyon] | 0 |
| P40826 | Ubiquitin carboxyl-terminal hydrolase 14 OS=Oryctolagus cuniculus OX=9986 GN=USP14 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0A9PP08 | Ubiquitin carboxyl-terminal hydrolase 6 OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0022390, gene-QOZ80_4BG0332740 |