Basic Information
Locus ID:
gene-QOZ80_4BG0331560
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 1665523 | 1667191 | + | gene-QOZ80_4BG0331560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 59,039.34 Da | 42.93 | 73.91 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 24 | 151 | 8.29985E-13 | IPR002083 |
| CDD | cd00121 | MATH | 216 | 344 | 5.67109E-11 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 404 | 465 | 4.6E-7 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 372 | 466 | 2.56E-8 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 212 | 348 | 2.29E-14 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 18 | 154 | 2.45E-15 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 469 | 531 | 2.6E-8 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 214 | 350 | 2.6E-11 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 397 | 468 | 7.1E-8 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 20 | 154 | 5.9E-13 | IPR008974 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 215 | 346 | 11.288199 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 20 | 151 | 15.481598 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G43700.1 | BTB-POZ and MATH domain 6. | 0 |
| RefSeq | XP_034585246.1 | BTB/POZ and MATH domain-containing protein 1-like [Setaria viridis] | 0 |
| A1L4W5 | BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=BPM6 PE=1 SV=1 | 0 | |
| TrEMBL | K3ZEL5 | BTB domain-containing protein OS=Setaria italica OX=4555 GN=101785763 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300850, gene-QOZ80_4BG0331560 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G001920, Chr25G001520, Chr30G001520 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23089 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20606 |