Basic Information
Locus ID:
gene-QOZ80_4BG0330010
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 743009 | 747948 | - | gene-QOZ80_4BG0330010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 86,865.14 Da | 62.26 | 64.79 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 465 | 502 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 305 | 338 | 1.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 424 | 460 | 9.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 599 | 636 | 0.024 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 301 | 640 | 2.41E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 402 | 675 | 7.1E-47 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 262 | 360 | 2.8E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 422 | 460 | 1.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 504 | 543 | 7.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 463 | 502 | 2.6E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 339 | 1.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 555 | 595 | 70.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 596 | 637 | 0.022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 745 | 790 | 230.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 429 | 469 | 14.719144 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 429 | 463 | 11.101955 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 469 | 504 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 307 | 348 | 14.752563 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 469 | 504 | 10.469233 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 307 | 344 | 11.81377 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 326 | 340 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 447 | 461 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 489 | 503 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 447 | 461 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 326 | 340 | 1.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 721 | 757 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 714 | 757 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 232 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_039819770.1 | WD repeat-containing protein 44-like [Panicum virgatum] | 0 |
| Q498F0 | WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TYX5 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_40185 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology