halophFGD

Basic Information

Locus ID: gene-QOZ80_4AG0323950

Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504

Genome Assembly: GCA_032690845.1

Description: transposition, RNA-mediated

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4A	27951781	27954282	+	gene-QOZ80_4AG0323950

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.02	85,317.11 Da	49.28	69.45	-0.64

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00303	retropepsin_like	523	616	8.66676E-20	-
Pfam	PF03732	Retrotransposon gag protein	93	156	1.2E-9	IPR005162
SUPERFAMILY	SSF50630	Acid proteases	518	624	8.44E-8	IPR021109
Gene3D	G3DSA:2.40.70.10	Acid Proteases	498	648	1.6E-28	IPR021109
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	241	256	9.042855	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	371	427	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	47	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	410	427	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	752	770	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	15	31	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	691	770	-	-
Coils	Coil	Coil	681	701	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_021321656.1	uncharacterized protein LOC110437512 [Sorghum bicolor]	0
TrEMBL	Q7XRT2	OSJNBa0042F21.11 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0042F21.11 PE=4 SV=2	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	2	gene_12571, gene_15568
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg55472, Sbi_jg8972
Arecaceae	Phoenix dactylifera	1	gene-LOC120107363
Asteraceae	Flaveria trinervia	4	Ftri10G03390, Ftri12G31698, Ftri2G11694, FtriNA14812
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g09880
Plumbaginaceae	Limonium bicolor	3	Lb1G00264, Lb3G20497, Lb4G25704
Poaceae	Echinochloa crus-galli	4	AH03.1315, CH03.1969, CH05.577, CH08.1150
Poaceae	Eleusine coracana subsp. coracana	35	gene-QOZ80_1AG0019390, gene-QOZ80_1BG0066180 ... gene-QOZ80_1BG0067080, gene-QOZ80_1BG0067700, gene-QOZ80_1BG0069300, gene-QOZ80_1BG0074530, gene-QOZ80_1BG0074640, gene-QOZ80_2AG0123690, gene-QOZ80_2BG0178930, gene-QOZ80_2BG0179290, gene-QOZ80_3BG0274590, gene-QOZ80_4AG0322600, gene-QOZ80_4AG0323530, gene-QOZ80_4AG0323950, gene-QOZ80_4BG0346930, gene-QOZ80_6AG0521910, gene-QOZ80_6AG0522850, gene-QOZ80_6BG0469260, gene-QOZ80_7AG0562030, gene-QOZ80_7AG0565250, gene-QOZ80_7AG0565790, gene-QOZ80_7BG0597510, gene-QOZ80_9AG0679840, gene-QOZ80_9AG0680620, gene-QOZ80_9AG0681730, gene-QOZ80_9AG0681740, gene-QOZ80_9BG0703180, gene-QOZ80_9BG0703330, gene-QOZ80_9BG0705840, gene-QOZ80_9BG0705990, gene-QOZ80_UnG0719230, gene-QOZ80_UnG0719250, gene-QOZ80_UnG0722140, gene-QOZ80_UnG0722970, gene-QOZ80_UnG0725070
Poaceae	Oryza sativa	2	ChrUn.fgenesh.mRNA.3, LOC_Os10g04210.1
Poaceae	Paspalum vaginatum	16	gene-BS78_01G262700, gene-BS78_02G095400, gene-BS78_K070500 ... gene-BS78_02G095500, gene-BS78_02G096200, gene-BS78_02G096600, gene-BS78_02G138900, gene-BS78_04G125400, gene-BS78_04G130800, gene-BS78_05G126800, gene-BS78_06G050000, gene-BS78_06G056600, gene-BS78_08G041200, gene-BS78_09G091400, gene-BS78_K179500, gene-BS78_K270700
Poaceae	Sporobolus alterniflorus	8	Chr01G020320, Chr09G007960, Chr10G004130, Chr20G010620 ... Chr25G012420, Chr27G000820, Chr27G001310, Chr27G001320
Poaceae	Zoysia japonica	11	nbis-gene-1312, nbis-gene-27882, nbis-gene-27898 ... nbis-gene-33840, nbis-gene-33894, nbis-gene-46925, nbis-gene-46926, nbis-gene-46927, nbis-gene-46928, nbis-gene-54284, nbis-gene-54872
Portulacaceae	Portulaca oleracea	10	evm.TU.LG03.1598, evm.TU.LG09.83, evm.TU.LG12.179 ... evm.TU.LG12.279, evm.TU.LG13.1372, evm.TU.LG17.1036, evm.TU.LG20.1444, evm.TU.LG21.1154, evm.TU.LG21.524, evm.TU.LG21.880
Solanaceae	Lycium barbarum	13	gene-LOC132607653, gene-LOC132607841, gene-LOC132607949 ... gene-LOC132609991, gene-LOC132610532, gene-LOC132611934, gene-LOC132612136, gene-LOC132612197, gene-LOC132612778, gene-LOC132613012, gene-LOC132613198, gene-LOC132613984, gene-LOC132637633