Basic Information
Locus ID:
gene-QOZ80_4AG0321150
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Glycosyl hydrolases family 18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 19906146 | 19907654 | + | gene-QOZ80_4AG0321150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 49,408.71 Da | 46.91 | 90.04 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 38 | 380 | 1.5E-48 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 276 | 351 | 1.36E-9 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 36 | 384 | 1.17E-48 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 53 | 380 | 6.7E-68 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 275 | 351 | 6.7E-68 | IPR029070 |
| SMART | SM00636 | 2g34 | 35 | 380 | 3.5E-57 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 34 | 397 | 45.9216 | IPR001223 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 433 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19800.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_034605923.1 | nod factor hydrolase protein 1-like isoform X1 [Setaria viridis] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9TR83 | GH18 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_37293 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology