Basic Information
Locus ID:
gene-QOZ80_4AG0320490
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 18360249 | 18361513 | + | gene-QOZ80_4AG0320490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 40,546.79 Da | 57.04 | 76.59 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 318 | 358 | 2.3E-7 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 31 | 96 | 3.05E-6 | IPR036047 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 318 | 363 | 3.49E-10 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 108 | 238 | 6.15E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 84 | 253 | 3.1E-16 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 312 | 363 | 2.8E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 316 | 358 | 10.95451 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 34 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_002447657.2 | F-box protein At1g67340 [Sorghum bicolor] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TS23 | MYND-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_37459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology