Basic Information
Locus ID:
gene-QOZ80_4AG0318680
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 15500760 | 15504975 | - | gene-QOZ80_4AG0318680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 44,642.73 Da | 32.39 | 83.56 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 10 | 274 | 1.4E-80 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 10 | 330 | 2.69E-110 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 2 | 343 | 2.2E-126 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 3 | 390 | 4.1E-189 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 126 | 141 | 1.5E-22 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 212 | 222 | 1.5E-22 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 94 | 117 | 1.5E-22 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 20 | 38 | 9.4E-47 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 173 | 186 | 9.4E-47 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 51 | 68 | 9.4E-47 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 190 | 208 | 9.4E-47 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 113 | 129 | 9.4E-47 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 72 | 92 | 9.4E-47 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 360 | 391 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44680.1 | histone deacetylase 9. Class I RPD3 type protein | 0 |
| RefSeq | XP_044966448.1 | histone deacetylase 9 isoform X2 [Hordeum vulgare subsp. vulgare] | 0 |
| Q8H0W2 | Histone deacetylase 9 OS=Arabidopsis thaliana OX=3702 GN=HDA9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453BXL3 | Histone deacetylase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology