Basic Information
Locus ID:
gene-QOZ80_4AG0316550
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 13121175 | 13123021 | - | gene-QOZ80_4AG0316550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 58,231.67 Da | 51.17 | 82.36 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 11 | 46 | 8.3E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 75 | 3.66E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 55 | 4.4E-8 | - |
| SMART | SM00256 | fbox_2 | 13 | 53 | 1.5E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 7 | 53 | 9.762413 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004978022.1 | uncharacterized protein LOC101781430 [Setaria italica] | 0 |
| TrEMBL | A0A4U6TSR2 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_7G116000v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0316550, gene-QOZ80_4BG0347750 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.4HG0414150.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 17 | gene-QYE76_026431, gene-QYE76_026432, gene-QYE76_026433 ... |
| Poaceae | Oryza coarctata | 2 | Oco07G006550, Oco11G007950 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G105400 |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0100957, Pt_Chr0108093, Pt_Chr0108094, Pt_Chr0604534 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr23G012460, Chr26G007060 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G588900, Tel6E01G732600 |
| Poaceae | Triticum aestivum | 17 | TraesCS3A02G500300.1, TraesCS3A02G500800.1.cds1 ... |