Basic Information
Locus ID:
gene-QOZ80_4AG0309680
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 7813758 | 7822412 | - | gene-QOZ80_4AG0309680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 98,184.51 Da | 47.94 | 79.26 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 623 | 683 | 2.5E-7 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 166 | 275 | 3.5E-6 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 744 | 813 | 5.29E-9 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 622 | 683 | 3.31E-12 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 42 | 301 | 5.56E-20 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 622 | 701 | 2.6E-9 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 42 | 310 | 2.1E-25 | IPR023214 |
| SMART | SM00577 | forpap2 | 109 | 284 | 9.6E-9 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 620 | 684 | 5.3E-7 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 744 | 809 | 0.032 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 648 | 685 | 11.309919 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 48 | 300 | 16.510645 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 467 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_039774792.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Panicum virgatum] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TUM5 | protein-serine/threonine phosphatase OS=Eragrostis curvula OX=38414 GN=EJB05_38612 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology