Basic Information
Locus ID:
gene-QOZ80_4AG0306540
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Short Name:
BRH1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 5590588 | 5591220 | + | gene-QOZ80_4AG0306540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 23,108.24 Da | 51.76 | 93.91 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 110 | 153 | 6.7713E-13 | - |
| Pfam | PF13639 | Ring finger domain | 109 | 153 | 5.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 95 | 159 | 1.2E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 158 | 1.2E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 109 | 153 | 0.0026 | IPR011016 |
| SMART | SM00184 | ring_2 | 110 | 152 | 2.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 110 | 153 | 12.017182 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61460.1 | brassinosteroid-responsive RING-H2. Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. | 0 |
| RefSeq | XP_034602045.1 | E3 ubiquitin-protein ligase RHA1B-like [Setaria viridis] | 0 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6TWR8 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_7G221200v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology