Basic Information
Locus ID:
gene-QOZ80_4AG0305180
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 4746415 | 4748231 | - | gene-QOZ80_4AG0305180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 51,857.87 Da | 50.53 | 76.50 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 170 | 443 | 1.64981E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 408 | 443 | 0.0063 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 269 | 304 | 1.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 321 | 358 | 0.0074 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 187 | 245 | 1.6E-6 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 162 | 443 | 7.51E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 95 | 446 | 8.7E-123 | IPR015943 |
| SMART | SM00320 | WD40_4 | 181 | 220 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 316 | 358 | 0.0089 | IPR001680 |
| SMART | SM00320 | WD40_4 | 265 | 304 | 2.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 223 | 261 | 0.62 | IPR001680 |
| SMART | SM00320 | WD40_4 | 361 | 401 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 443 | 1.5E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 188 | 220 | 8.597424 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 411 | 444 | 10.469233 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 411 | 444 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 272 | 305 | 11.629227 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 188 | 229 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 272 | 313 | 14.953072 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 291 | 305 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 430 | 444 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_039773777.1 | cell division cycle 20.2, cofactor of APC complex-like [Panicum virgatum] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TX68 | CobW C-terminal domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_39438 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology