Basic Information
Locus ID:
gene-QOZ80_4AG0301800
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Short Name:
NTMC2T2.1
Description:
C2 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 2359739 | 2364267 | - | gene-QOZ80_4AG0301800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 64,148.54 Da | 36.51 | 99.82 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 264 | 366 | 5.7857E-27 | - |
| CDD | cd00030 | C2 | 442 | 538 | 2.62032E-24 | - |
| Pfam | PF00168 | C2 domain | 440 | 542 | 1.9E-27 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 248 | 9.3E-14 | IPR039010 |
| Pfam | PF00168 | C2 domain | 262 | 366 | 5.9E-23 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 437 | 559 | 3.82E-34 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 261 | 391 | 1.5E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 424 | 558 | 8.6E-38 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 255 | 390 | 8.0E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 263 | 363 | 8.1E-24 | IPR000008 |
| SMART | SM00239 | C2_3c | 441 | 539 | 2.7E-24 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 21.883837 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 28.485199 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 422 | 540 | 22.451973 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 483 | 496 | 4.3E-8 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 457 | 469 | 4.3E-8 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 505 | 513 | 4.3E-8 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_015637265.1 | synaptotagmin-5 [Oryza sativa Japonica Group] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TYB8 | Synaptotagmin-5-like OS=Eragrostis curvula OX=38414 GN=EJB05_39884 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology