Basic Information
Locus ID:
gene-QOZ80_4AG0300850
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 1688629 | 1690206 | + | gene-QOZ80_4AG0300850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 51,583.83 Da | 35.95 | 76.26 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 23 | 150 | 1.83148E-11 | IPR002083 |
| CDD | cd00121 | MATH | 172 | 221 | 2.25487E-8 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 335 | 396 | 3.8E-7 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 17 | 154 | 2.62E-14 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 168 | 280 | 1.96E-11 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 303 | 397 | 2.04E-8 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 170 | 275 | 2.5E-7 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 328 | 399 | 5.8E-8 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 400 | 462 | 7.2E-9 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 19 | 153 | 3.0E-12 | IPR008974 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 19 | 150 | 14.458817 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G43700.1 | BTB-POZ and MATH domain 6. | 0 |
| RefSeq | XP_034585246.1 | BTB/POZ and MATH domain-containing protein 1-like [Setaria viridis] | 0 |
| A1L4W5 | BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=BPM6 PE=1 SV=1 | 0 | |
| TrEMBL | K3ZEL5 | BTB domain-containing protein OS=Setaria italica OX=4555 GN=101785763 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300850, gene-QOZ80_4BG0331560 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G001920, Chr25G001520, Chr30G001520 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23089 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20606 |