Basic Information
Locus ID:
gene-QOZ80_4AG0299320
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 760661 | 765574 | - | gene-QOZ80_4AG0299320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 86,344.64 Da | 61.66 | 64.58 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 594 | 631 | 0.024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 460 | 497 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 301 | 334 | 1.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 419 | 455 | 9.8E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 297 | 635 | 1.36E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 259 | 354 | 4.5E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 403 | 679 | 4.7E-47 | IPR015943 |
| SMART | SM00320 | WD40_4 | 740 | 785 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 591 | 632 | 0.022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 417 | 455 | 1.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 499 | 538 | 7.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 550 | 590 | 70.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 458 | 497 | 2.6E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 296 | 335 | 1.8E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 424 | 458 | 11.101955 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 464 | 499 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 303 | 344 | 14.752563 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 424 | 464 | 14.719144 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 464 | 499 | 10.469233 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 303 | 340 | 11.81377 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 322 | 336 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 442 | 456 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 322 | 336 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 484 | 498 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 442 | 456 | 1.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 705 | 754 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 716 | 753 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 124 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_025824346.1 | WD repeat-containing protein 44-like [Panicum hallii] | 0 |
| Q498F0 | WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TYX5 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_40185 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology