Basic Information
Locus ID:
gene-QOZ80_4AG0298690
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 424908 | 426479 | + | gene-QOZ80_4AG0298690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 56,962.47 Da | 57.06 | 90.13 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 14 | 56 | 4.11138E-20 | - |
| Pfam | PF04564 | U-box domain | 10 | 82 | 1.0E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 220 | 412 | 3.96E-11 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 6 | 87 | 3.13E-26 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 128 | 428 | 3.6E-10 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 89 | 4.0E-26 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 13 | 77 | 5.1E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 9 | 84 | 30.820185 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_004959992.1 | E3 ubiquitin-protein ligase PUB23 [Setaria italica] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | K3Z6K1 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101772242 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology