Basic Information
Locus ID:
gene-QOZ80_4AG0298310
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4A | 202865 | 206698 | - | gene-QOZ80_4AG0298310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.39 | 44,581.02 Da | 55.26 | 89.98 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 261 | 303 | 2.02655E-23 | - |
| CDD | cd02123 | PA_C_RZF_like | 42 | 190 | 2.32219E-53 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 261 | 303 | 3.2E-11 | IPR001841 |
| Pfam | PF02225 | PA domain | 108 | 169 | 4.7E-10 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 108 | 171 | 2.35E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 241 | 309 | 9.72E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 223 | 308 | 4.9E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 49 | 183 | 9.6E-29 | - |
| SMART | SM00184 | ring_2 | 261 | 302 | 2.9E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 261 | 303 | 12.179465 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_025823052.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X1 [Panicum hallii] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9U0L6 | RING-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_40283 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology