halophFGD

Basic Information

Locus ID: gene-QOZ80_3BG0297450

Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504

Genome Assembly: GCA_032690845.1

Description: Citrate transporter

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3B	63834447	63836378	+	gene-QOZ80_3BG0297450

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.51	51,093.04 Da	35.82	119.25	0.78

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01117	YbiR_permease	28	475	4.60393E-116	-
Pfam	PF03600	Citrate transporter	29	423	2.2E-48	IPR004680

Gene Ontology

Biological Process:

GO:0055085 (transmembrane transport)

Cellular Component:

GO:0016020 (membrane)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G02260.1	Divalent ion symporter.
RefSeq	XP_004986055.1	silicon efflux transporter LSI2 [Setaria italica]
Swiss-Prot	Q10SY9	Silicon efflux transporter LSI2 OS=Oryza sativa subsp. japonica OX=39947 GN=LSI2 PE=1 SV=1
TrEMBL	A0A5Q2WYH3	Silicon efflux transporter OS=Eleusine coracana OX=4511 GN=Lsi2 PE=2 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg13967, jg13968, jg2282
Aizoaceae	Mesembryanthemum crystallinum	1	gene_3228
Amaranthaceae	Atriplex hortensis	1	Ah018846
Amaranthaceae	Beta vulgaris	1	BVRB_3g055010
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg6518
Amaranthaceae	Salicornia europaea	1	Seu_jg15400
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00006492
Amaranthaceae	Suaeda glauca	2	Sgl01947, Sgl07102
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000002025, gene:ENSEOMG00000029389 ... gene:ENSEOMG00000043591
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0003210, CQ.Regalona.r1.3BG0003400
Anacardiaceae	Pistacia vera	5	pistato.v30183040, pistato.v30183050, pistato.v30183070 ... pistato.v30183080, pistato.v30183170
Apiaceae	Apium graveolens	1	Ag2G02030
Arecaceae	Cocos nucifera	8	COCNU_07G009770, COCNU_07G011320, COCNU_07G011330 ... COCNU_08G010780, COCNU_09G008290, COCNU_10G007450, COCNU_10G008440, COCNU_10G008450
Arecaceae	Phoenix dactylifera	8	gene-LOC103698921, gene-LOC103705488, gene-LOC103710354 ... gene-LOC103713335, gene-LOC103713336, gene-LOC103719557, gene-LOC103719558, gene-LOC103721631
Asparagaceae	Asparagus officinalis	1	AsparagusV1_07.1854.V1.1
Asteraceae	Flaveria trinervia	2	Ftri4G18497, Ftri8G09810
Brassicaceae	Arabidopsis thaliana	1	AT1G02260.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10007447m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp1g01330.v2.2
Brassicaceae	Brassica nigra	1	BniB02g000060.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq09G1459
Casuarinaceae	Casuarina glauca	2	Cgl09G1552, Cgl09G1553
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.2755
Plantaginaceae	Plantago ovata	1	Pov_00040988
Plumbaginaceae	Limonium bicolor	4	Lb1G03957, Lb1G04007, Lb3G18920, Lb3G18921
Poaceae	Echinochloa crus-galli	16	AH01.2013, AH01.3012, AH01.4970, AH01.5018, AH07.3986 ... BH01.2216, BH01.2217, BH01.3346, BH01.4909, BH07.3801, CH01.2311, CH01.3593, CH01.5511, CH07.3859, Contig866.34, Contig931.39
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_2AG0115680, gene-QOZ80_2AG0126340 ... gene-QOZ80_2AG0150940, gene-QOZ80_2BG0169530, gene-QOZ80_2BG0181980, gene-QOZ80_2BG0206370, gene-QOZ80_3AG0230410, gene-QOZ80_3AG0233670, gene-QOZ80_3BG0294240, gene-QOZ80_3BG0297450
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0039240.1, HORVU.MOREX.r3.1HG0055620.1 ... HORVU.MOREX.r3.4HG0407900.1, HORVU.MOREX.r3.4HG0414490.1, HORVU.MOREX.r3.6HG0631090.1
Poaceae	Lolium multiflorum	8	gene-QYE76_011322, gene-QYE76_012462, gene-QYE76_012503 ... gene-QYE76_026441, gene-QYE76_026442, gene-QYE76_067983, gene-QYE76_070769, gene-QYE76_071762
Poaceae	Oryza coarctata	10	Oco03G025680, Oco04G026160, Oco05G000400, Oco05G002880 ... Oco06G000390, Oco06G002890, Oco19G005160, Oco19G009490, Oco20G005090, Oco20G009370
Poaceae	Oryza sativa	5	LOC_Os02g57620.1, LOC_Os03g01700.1, LOC_Os03g05390.6 ... LOC_Os10g31040.3, LOC_Os10g39980.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G220300, gene-BS78_01G295100 ... gene-BS78_01G480900, gene-BS78_01G513400, gene-BS78_04G324100
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0100054, Pt_Chr0100075, Pt_Chr0105826, Pt_Chr0502478 ... Pt_Chr0502509, Pt_Chr0503109, Pt_Chr0503157, Pt_Chr0604538, Pt_Chr0605616
Poaceae	Sporobolus alterniflorus	11	Chr01G037270, Chr06G013580, Chr07G007010, Chr09G004320 ... Chr09G026590, Chr12G000310, Chr12G002100, Chr13G000530, Chr13G020620, Chr15G014310, Chr27G000250
Poaceae	Thinopyrum elongatum	7	Tel1E01G263700, Tel1E01G356500, Tel4E01G518700 ... Tel4E01G592000, Tel6E01G697800, Tel6E01G732700, Tel7E01G030100
Poaceae	Triticum dicoccoides	11	gene_TRIDC1AG021400, gene_TRIDC1AG031270 ... gene_TRIDC1BG026120, gene_TRIDC1BG036690, gene_TRIDC4AG055460, gene_TRIDC4BG053030, gene_TRIDC4BG060480, gene_TRIDC5AG075160, gene_TRIDC5AG075170, gene_TRIDC6AG059080, gene_TRIDC6BG069900
Poaceae	Triticum aestivum	15	TraesCS1A02G142400.1, TraesCS1A02G207300.1 ... TraesCS1B02G159400.1, TraesCS1B02G221100.1, TraesCS1D02G141400.1, TraesCS1D02G210500.1, TraesCS4A02G412500.1, TraesCS4B02G312600.1, TraesCS4B02G361900.1, TraesCS4D02G310100.1, TraesCS4D02G354900.1, TraesCS5A02G529900.1, TraesCS6A02G402000.1, TraesCS6B02G444100.2, TraesCS6D02G385600.1
Poaceae	Zea mays	6	Zm00001eb000580_P001, Zm00001eb003830_P002 ... Zm00001eb022890_P001, Zm00001eb046960_P001, Zm00001eb191060_P001, Zm00001eb222400_P001
Poaceae	Zoysia japonica	9	nbis-gene-21284, nbis-gene-2903, nbis-gene-3202 ... nbis-gene-36255, nbis-gene-39776, nbis-gene-4509, nbis-gene-47012, nbis-gene-4783, nbis-gene-4784
Poaceae	Zoysia macrostachya	8	Zma_g12854, Zma_g13320, Zma_g15630, Zma_g17444, Zma_g2071 ... Zma_g2279, Zma_g4425, Zma_g4614
Portulacaceae	Portulaca oleracea	3	evm.TU.LG10.357, evm.TU.LG11.1648, evm.TU.LG17.352
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_11_RagTag.1414 ... evm.TU.Scaffold_14_RagTag.172
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-12703, nbisL1-mrna-18218
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-16221, nbisL1-mrna-16237
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-22424, nbisL1-mrna-8537, nbisL1-mrna-8538
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000007l.151, add.evm.TU.utg000007l.152 ... add.evm.TU.utg000007l.159, evm.TU.utg000007l.289, evm.TU.utg000010l.389
Rhizophoraceae	Kandelia obovata	1	Maker00008978
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1092, nbisL1-mrna-16032
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-10910, nbisL1-mrna-20573
Salicaceae	Populus euphratica	7	populus_peu24738, populus_peu24739, populus_peu29307 ... populus_peu29308, populus_peu29309, populus_peu30669, populus_peu34421
Solanaceae	Lycium barbarum	2	gene-LOC132631945, gene-LOC132639353
Solanaceae	Solanum chilense	2	SOLCI001368300, SOLCI002735300
Solanaceae	Solanum pennellii	2	gene-LOC107013857, gene-LOC107021305
Tamaricaceae	Reaumuria soongarica	1	gene_10802
Tamaricaceae	Tamarix chinensis	2	TC06G2360, TC08G1564