Basic Information
Locus ID:
gene-QOZ80_3BG0289790
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 58845121 | 58850642 | + | gene-QOZ80_3BG0289790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 69,597.22 Da | 47.09 | 80.33 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 53 | 166 | 7.31946E-25 | - |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 348 | 407 | 1.1E-15 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 412 | 479 | 1.8E-5 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 13 | 344 | 2.8E-89 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 86 | 144 | 7.4E-9 | IPR002934 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 347 | 473 | 3.53E-35 | IPR011068 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 13 | 211 | 2.03E-39 | IPR043519 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 199 | 344 | 1.23E-60 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 13 | 343 | 1.0E-131 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 347 | 462 | 1.0E-27 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 45 | 193 | 1.0E-131 | IPR043519 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 2 | 561 | 1.5E-190 | IPR014492 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_004958551.1 | nuclear poly(A) polymerase 1 [Setaria italica] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WNS3 | polynucleotide adenylyltransferase OS=Eragrostis curvula OX=38414 GN=EJB05_00870 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology