Basic Information
Locus ID:
gene-QOZ80_3BG0285760
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 56026926 | 56029523 | + | gene-QOZ80_3BG0285760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 56,361.72 Da | 62.29 | 66.04 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 127 | 179 | 1.42697E-23 | - |
| Pfam | PF00412 | LIM domain | 127 | 181 | 3.7E-9 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 276 | 490 | 4.1E-100 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 153 | 207 | 3.08E-6 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 121 | 152 | 3.69E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 122 | 186 | 4.3E-13 | - |
| SMART | SM00132 | lim_4 | 126 | 178 | 2.0E-9 | IPR001781 |
| SMART | SM00726 | uim | 90 | 109 | 71.0 | IPR003903 |
| SMART | SM00726 | uim | 58 | 77 | 6.8 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 125 | 185 | 11.592999 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 127 | 161 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 92 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39830.1 | DA1-related protein 2. | 0 |
| RefSeq | XP_004984914.1 | protein DA1-related 2 isoform X1 [Setaria italica] | 0 |
| Q10NJ6 | LIM domain-containing protein HDR3 OS=Oryza sativa subsp. japonica OX=39947 GN=HDR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WH47 | LIM zinc-binding domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_07215 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology