Basic Information
Locus ID:
gene-QOZ80_3BG0285250
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 55698015 | 55702674 | - | gene-QOZ80_3BG0285250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 83,092.59 Da | 46.08 | 92.46 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 348 | 390 | 8.87023E-26 | - |
| Pfam | PF04564 | U-box domain | 344 | 414 | 1.3E-19 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 552 | 590 | 3.2E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 470 | 508 | 2.0E-9 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 332 | 419 | 1.57E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 443 | 715 | 2.34E-48 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 343 | 417 | 6.3E-30 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 518 | 617 | 2.0E-21 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 618 | 736 | 6.9E-13 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 425 | 517 | 1.7E-16 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 102 | 214 | 8.8E-9 | IPR036537 |
| SMART | SM00185 | arm_5 | 427 | 467 | 170.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 551 | 591 | 0.0012 | IPR000225 |
| SMART | SM00185 | arm_5 | 677 | 717 | 490.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 592 | 632 | 14.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 469 | 509 | 6.1E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 510 | 550 | 7.4 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 347 | 410 | 2.0E-31 | IPR003613 |
| SMART | SM00185 | arm_5 | 633 | 673 | 270.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 562 | 604 | 9.3274 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 343 | 417 | 44.22142 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 480 | 522 | 12.0924 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 603 | 645 | 9.502399 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 737 | 767 | - | - |
| Coils | Coil | Coil | 708 | 728 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_034574241.1 | protein spotted leaf 11-like [Setaria viridis] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4U6T967 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_9G456100v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology