Basic Information
Locus ID:
gene-QOZ80_3BG0283740
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 54729546 | 54732022 | + | gene-QOZ80_3BG0283740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 40,252.47 Da | 34.67 | 90.84 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF101908 | Putative isomerase YbhE | 9 | 273 | 1.44E-15 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 271 | 2.4E-10 | IPR015943 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_004971179.1 | autophagy-related protein 18a [Setaria italica] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SVF4 | WD repeat domain phosphoinositide-interacting protein 4 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_51512 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH07.2345, BH03.4349, BH03.4350, CH07.167 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0244420, gene-QOZ80_3BG0283610 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G137700 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr24G012750 |