Basic Information
Locus ID:
gene-QOZ80_3BG0279620
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 50886774 | 50888414 | + | gene-QOZ80_3BG0279620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 34,007.65 Da | 43.07 | 73.82 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 167 | 295 | 2.1095E-64 | - |
| CDD | cd16571 | RING-HC_SIAHs | 51 | 89 | 5.70471E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 95 | 294 | 3.5E-79 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 106 | 298 | 3.73E-48 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 45 | 93 | 5.71E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 160 | 3.6E-16 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 161 | 294 | 2.0E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 105 | 1.8E-7 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 106 | 166 | 14.04899 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 53 | 89 | 9.1551 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_004984335.1 | E3 ubiquitin-protein ligase SINAT3 [Setaria italica] | 0 |
| Q10L91 | E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WE60 | RING-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_06588 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology