Basic Information
Locus ID:
gene-QOZ80_3BG0276980
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 46598536 | 46599198 | - | gene-QOZ80_3BG0276980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.74 | 23,123.21 Da | 86.84 | 64.09 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 112 | 166 | 3.3E-10 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 112 | 172 | 1.46E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 97 | 179 | 3.1E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 113 | 165 | 1.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 113 | 166 | 11.36805 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034572608.1 | probable E3 ubiquitin-protein ligase ATL45 [Setaria viridis] | 0 |
| TrEMBL | A0A4U6T5E8 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G379000v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.3385, BH01.3682, CH01.3973 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0276980 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0178480.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067425 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g28040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G337000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G024620 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2AG051090 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G352900.1.cds1, TraesCS2B02G370700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb392800_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43538 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3416 |