Basic Information
Locus ID:
gene-QOZ80_3BG0268840
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 13354112 | 13354549 | - | gene-QOZ80_3BG0268840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 14,877.37 Da | 47.13 | 97.72 | 0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 72 | 116 | 2.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 66 | 122 | 2.51E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 49 | 119 | 1.5E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 72 | 115 | 6.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 72 | 116 | 11.117249 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039826551.1 | E3 ubiquitin-protein ligase EL5-like [Panicum virgatum] | 0 |
| O22755 | Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WD58 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_05412 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 7 | AH01.1316, AH01.1317, BH01.1369, BH01.1370, BH01.1371 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_3AG0223860, gene-QOZ80_3AG0223890 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0507880.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_063340, gene-QYE76_063341, gene-QYE76_063342 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os03g44636.1, LOC_Os03g44642.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G142000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0200097 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G009170, Chr04G025050 |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G592800, Tel5E01G592900, Tel5E01G593100 |
| Poaceae | Triticum aestivum | 7 | TraesCS5A02G372500.1.cds1, TraesCS5A02G372600.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb050250_P001, Zm00001eb050260_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3168, Zma_g850 |