Basic Information
Locus ID:
gene-QOZ80_3BG0263990
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
PHD-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3B | 7276405 | 7279408 | + | gene-QOZ80_3BG0263990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 79,314.84 Da | 49.77 | 85.60 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15556 | PHD_MMD1_like | 652 | 697 | 1.09261E-23 | - |
| Pfam | PF00628 | PHD-finger | 653 | 697 | 9.0E-9 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 643 | 697 | 1.11E-12 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 637 | 700 | 3.9E-15 | IPR013083 |
| SMART | SM00249 | PHD_3 | 652 | 698 | 9.8E-6 | IPR001965 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 653 | 697 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 39 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66170.1 | RING/FYVE/PHD zinc finger superfamily protein. encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus. | 0 |
| RefSeq | XP_004986276.1 | PHD finger protein MALE MEIOCYTE DEATH 1 [Setaria italica] | 0 |
| Q7X6Y7 | PHD finger protein MALE MEIOCYTE DEATH 1 OS=Arabidopsis thaliana OX=3702 GN=MMD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WBR4 | PHD domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_04842 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology