halophFGD

Basic Information

Locus ID: gene-QOZ80_3BG0261780

Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504

Genome Assembly: GCA_032690845.1

Description: Pentacotripeptide-repeat region of PRORP

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3B	5689662	5691347	-	gene-QOZ80_3BG0261780

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.99	63,278.63 Da	47.90	82.89	-0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12854	PPR repeat	474	507	4.3E-6	IPR002885
Pfam	PF12854	PPR repeat	369	402	2.5E-6	IPR002885
Pfam	PF12854	PPR repeat	266	297	3.0E-8	IPR002885
Pfam	PF01535	PPR repeat	168	196	1.3	IPR002885
Pfam	PF13041	PPR repeat family	202	248	1.7E-7	IPR002885
Pfam	PF13041	PPR repeat family	303	351	1.0E-13	IPR002885
Pfam	PF13041	PPR repeat family	408	457	1.3E-12	IPR002885
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	331	426	3.0E-30	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	264	330	7.2E-18	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	129	263	1.8E-21	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	427	551	1.3E-20	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	341	375	4.4E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	378	409	1.9E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	412	445	6.6E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	272	305	3.0E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	204	235	5.5E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	306	340	6.8E-9	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	482	513	9.0E-5	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	444	478	8.747175	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	269	303	13.054966	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	479	513	10.731171	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	200	234	9.689847	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	374	408	12.090371	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	409	443	10.796938	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	304	338	11.443655	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	339	373	12.112294	IPR002885

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G22670.1	Pentatricopeptide repeat (PPR) superfamily protein.
RefSeq	XP_012704356.1	pentatricopeptide repeat-containing protein At3g22670, mitochondrial [Setaria italica]
Swiss-Prot	Q9LUJ4	Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22670 PE=2 SV=1
TrEMBL	K4AMS1	PPR_long domain-containing protein OS=Setaria italica OX=4555 GN=101753943 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg5752, jg9557
Aizoaceae	Mesembryanthemum crystallinum	2	gene_3540, gene_5373
Amaranthaceae	Beta vulgaris	1	BVRB_6g151540
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg26547, Sbi_jg34020, Sbi_jg42730, Sbi_jg45355
Amaranthaceae	Salicornia europaea	2	Seu_jg11218, Seu_jg15074
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00002583
Amaranthaceae	Suaeda glauca	4	Sgl35089, Sgl40474, Sgl73833, Sgl77335
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000002884, gene:ENSEOMG00000006357 ... gene:ENSEOMG00000015373, gene:ENSEOMG00000037249
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.6AG0003540, CQ.Regalona.r1.6BG0003500 ... CQ.Regalona.r1.7AG0010320
Anacardiaceae	Pistacia vera	2	pistato.v30228080, pistato.v30236350
Apiaceae	Apium graveolens	2	Ag1G01844, Ag5G02278
Arecaceae	Cocos nucifera	3	COCNU_03G001310, COCNU_03G001330, COCNU_04G007320
Arecaceae	Phoenix dactylifera	2	gene-LOC103718091, gene-LOC103718684
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.2689.V1.1, AsparagusV1_08.1881.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G22017, Ftri9G15803
Brassicaceae	Arabidopsis thaliana	2	AT3G04130.1, AT3G22670.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10020419m.g.v1.0, Thhalv10020548m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g03100.v2.2, Sp3g20430.v2.2
Brassicaceae	Brassica nigra	4	BniB01g059340.2N, BniB03g024780.2N, BniB07g032460.2N ... BniB07g032470.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq07G1278
Casuarinaceae	Casuarina glauca	1	Cgl07G1351
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno05g03570, gene.Cymno09g09580
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g04160
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.712, evm.TU.LG11.999
Plantaginaceae	Plantago ovata	2	Pov_00021764, Pov_00022238
Plumbaginaceae	Limonium bicolor	2	Lb1G00954, Lb1G08048
Poaceae	Echinochloa crus-galli	4	BH01.2664, BH01.761, CH01.757, Contig309.108
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0136490, gene-QOZ80_2BG0192130 ... gene-QOZ80_3AG0216460, gene-QOZ80_3BG0261780
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.5HG0510080.1.CDS1 ... HORVU.MOREX.r3.6HG0592070.1.CDS1
Poaceae	Lolium multiflorum	2	gene-QYE76_023481, gene-QYE76_061911
Poaceae	Oryza coarctata	3	Oco03G014520, Oco04G014970, Oco06G024280
Poaceae	Oryza sativa	1	LOC_Os02g38950.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G083600, gene-BS78_04G186700
Poaceae	Sporobolus alterniflorus	4	Chr01G005430, Chr09G012410, Chr12G037810, Chr13G008330
Poaceae	Thinopyrum elongatum	1	Tel6E01G415700
Poaceae	Triticum dicoccoides	4	gene_TRIDC5AG056230, gene_TRIDC5BG060280 ... gene_TRIDC6AG033070, gene_TRIDC6BG039410
Poaceae	Triticum aestivum	6	TraesCS5A02G384400.1.cds1, TraesCS5B02G389200.1.cds1 ... TraesCS5D02G394000.1.cds1, TraesCS6A02G213800.1.cds1, TraesCS6B02G243800.1.cds1, TraesCS6D02G196400.1.cds1
Poaceae	Zea mays	2	Zm00001eb057030_P001, Zm00001eb246390_P001
Poaceae	Zoysia japonica	1	nbis-gene-23463
Poaceae	Zoysia macrostachya	2	Zma_g13832, Zma_g494
Portulacaceae	Portulaca oleracea	2	evm.TU.LG02.2560, evm.TU.LG13.94
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g07610, gene.Posoc04g01610, gene.Posoc05g00670
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_17_RagTag.159, evm.TU.Scaffold_6_RagTag.775
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-15921, nbisL1-mrna-23199
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-16773, nbisL1-mrna-9301
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-14672, nbisL1-mrna-649
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000011l.190, add.evm.TU.utg000013l.29
Rhizophoraceae	Kandelia obovata	1	Maker00006512
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-19530, nbisL1-mrna-22921
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-15954, nbisL1-mrna-3499
Salicaceae	Populus euphratica	5	populus_peu07647, populus_peu21418, populus_peu21419 ... populus_peu21420, populus_peu21689
Solanaceae	Lycium barbarum	2	gene-LOC132609668, gene-LOC132641233
Solanaceae	Solanum chilense	2	SOLCI004820900, SOLCI007024500
Solanaceae	Solanum pennellii	2	gene-LOC107020744, gene-LOC107031368
Tamaricaceae	Reaumuria soongarica	2	STRG.19726_chr07_+, gene_15533
Tamaricaceae	Tamarix chinensis	2	TC04G0518, TC09G0412
Zosteraceae	Zostera marina	3	Zosma01g34550.v3.1, Zosma01g40775.v3.1, Zosma04g00720.v3.1