Basic Information
Locus ID:
gene-QOZ80_3AG0248320
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Short Name:
RHC1A
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 48125389 | 48126255 | - | gene-QOZ80_3AG0248320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 32,314.86 Da | 68.93 | 52.78 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 187 | 228 | 4.37397E-25 | - |
| Pfam | PF14369 | zinc-ribbon | 7 | 37 | 7.9E-12 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 186 | 228 | 2.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 168 | 234 | 7.29E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 234 | 2.8E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 187 | 227 | 2.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 228 | 12.238477 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 288 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_039828770.1 | probable E3 ubiquitin-protein ligase RHC1A [Panicum virgatum] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0MU89 | RING-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_9NG593000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology