Basic Information
Locus ID:
gene-QOZ80_3AG0248180
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 48011391 | 48013648 | - | gene-QOZ80_3AG0248180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 29,654.62 Da | 53.24 | 46.05 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 194 | 248 | 1.8E-13 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 145 | 189 | 7.4E-8 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 18 | 92 | 2.9E-19 | IPR008913 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 83 | 140 | 9.68E-20 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 146 | 197 | 1.25E-11 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 16 | 81 | 9.15E-18 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 216 | 254 | 1.2E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 132 | 209 | 1.8E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 147 | 189 | 3.9E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 11 | 80 | 25.774536 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 82 | 146 | 33.305843 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 147 | 190 | 11.736875 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_025793989.1 | E3 ubiquitin-protein ligase SRFP1 isoform X1 [Panicum hallii] | 0 |
| Q10LI1 | E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SRFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7CCM5 | RING finger and CHY zinc finger domain-containing protein 1 OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G476800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology