halophFGD

Basic Information

Locus ID: gene-QOZ80_3AG0247820

Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504

Genome Assembly: GCA_032690845.1

Description: meprin and TRAF homology

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3A	47656847	47657200	-	gene-QOZ80_3AG0247820

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.06	13,181.00 Da	52.34	82.48	-0.39

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00651	BTB/POZ domain	2	69	8.7E-9	IPR000210
SUPERFAMILY	SSF54695	POZ domain	1	68	2.32E-10	IPR011333
Gene3D	G3DSA:3.30.710.10	Potassium Channel Kv1.1; Chain A	1	76	5.9E-15	IPR011333

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10523 (speckle-type POZ protein)

Pathway:

ko04340 (Hedgehog signaling pathway) map04340 (Hedgehog signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G39760.2	BTB/POZ/MATH-domains containing protein.
RefSeq	XP_021316866.1	LOW QUALITY PROTEIN: BTB and MATH domain-containing protein 40-like [Sorghum bicolor]
Swiss-Prot	O22286	BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=BPM3 PE=1 SV=1
TrEMBL	A0A811MD74	BTB domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS3017 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_3AG0247820
Poaceae	Triticum dicoccoides	1	gene_TRIDC1AG058890
Poaceae	Triticum aestivum	2	TraesCS1A02G400000.1.cds1, TraesCS1B02G428700.1.cds1