Basic Information
Locus ID:
gene-QOZ80_3AG0247630
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 47551646 | 47552095 | + | gene-QOZ80_3AG0247630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 15,932.24 Da | 40.06 | 86.51 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 85 | 129 | 1.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 68 | 133 | 6.19E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 139 | 4.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 86 | 128 | 2.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 86 | 129 | 12.341748 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47560.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004987002.1 | E3 ubiquitin-protein ligase EL5 [Setaria italica] | 0 |
| O22255 | RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9WGN5 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_06699 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4645 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.4054, CH01.4319 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0247630, gene-QOZ80_7AG0581660 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0112830.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_018681, gene-QYE76_038791, gene-QYE76_068013 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g02260.1 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr12G019650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G235300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G109000.1.cds1, TraesCS2B02G126700.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb016280_P001, Zm00001eb111410_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-103, nbis-gene-1626 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1237, Zma_g7070 |