Basic Information
Locus ID:
gene-QOZ80_3AG0242900
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 43599600 | 43604492 | + | gene-QOZ80_3AG0242900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 78,353.13 Da | 41.13 | 93.22 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 298 | 340 | 1.07278E-26 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 420 | 458 | 1.9E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 502 | 540 | 3.5E-9 | IPR000225 |
| Pfam | PF04564 | U-box domain | 294 | 364 | 1.7E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 284 | 369 | 1.06E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 392 | 665 | 6.53E-50 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 542 | 671 | 3.5E-17 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 50 | 164 | 8.3E-8 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 372 | 529 | 1.6E-33 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 294 | 367 | 1.6E-30 | IPR013083 |
| SMART | SM00185 | arm_5 | 460 | 500 | 7.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 583 | 623 | 150.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 627 | 667 | 430.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 419 | 459 | 6.1E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 501 | 541 | 0.0018 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 297 | 360 | 1.1E-32 | IPR003613 |
| SMART | SM00185 | arm_5 | 542 | 582 | 14.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 377 | 417 | 37.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 430 | 472 | 12.0924 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 512 | 554 | 8.9774 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 293 | 367 | 45.645576 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 553 | 595 | 10.1674 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 698 | 723 | - | - |
| Coils | Coil | Coil | 658 | 678 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_034574241.1 | protein spotted leaf 11-like [Setaria viridis] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4U6T967 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_9G456100v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology