Basic Information
Locus ID:
gene-QOZ80_3AG0242390
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 43244124 | 43247239 | - | gene-QOZ80_3AG0242390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 58,062.82 Da | 59.89 | 67.55 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 142 | 194 | 2.97786E-24 | - |
| Pfam | PF12315 | Protein DA1 | 291 | 505 | 3.0E-101 | IPR022087 |
| Pfam | PF00412 | LIM domain | 142 | 196 | 8.4E-9 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 136 | 167 | 3.86E-7 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 168 | 222 | 3.96E-6 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 137 | 201 | 7.6E-13 | - |
| SMART | SM00726 | uim | 105 | 124 | 71.0 | IPR003903 |
| SMART | SM00132 | lim_4 | 141 | 193 | 1.5E-10 | IPR001781 |
| SMART | SM00726 | uim | 73 | 92 | 6.8 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 140 | 200 | 11.474199 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 142 | 176 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 107 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39830.1 | DA1-related protein 2. | 0 |
| RefSeq | XP_039826894.1 | protein DA1-related 2-like isoform X1 [Panicum virgatum] | 0 |
| Q10NJ6 | LIM domain-containing protein HDR3 OS=Oryza sativa subsp. japonica OX=39947 GN=HDR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WH47 | LIM zinc-binding domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_07215 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology