Basic Information
Locus ID:
gene-QOZ80_3AG0241470
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 42609323 | 42616201 | - | gene-QOZ80_3AG0241470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.76 | 125,081.49 Da | 43.46 | 80.00 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 450 | 486 | 6.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 918 | 951 | 0.0033 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 340 | 662 | 8.47E-41 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 837 | 1096 | 1.12E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 509 | 690 | 3.6E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 829 | 1105 | 7.2E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 323 | 508 | 1.6E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 869 | 909 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 623 | 664 | 360.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.9E-12 | IPR006595 |
| SMART | SM00320 | WD40_4 | 340 | 379 | 21.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 400 | 440 | 4.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 534 | 577 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 829 | 866 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 580 | 620 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 490 | 531 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 912 | 951 | 1.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 446 | 487 | 8.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1002 | 1043 | 2.6 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 12.865168 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 919 | 951 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 453 | 496 | 9.873505 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 919 | 951 | 10.179234 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 474 | 488 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1097 | 1133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1108 | 1133 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_025792937.1 | protein TPR3 isoform X2 [Panicum hallii] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WID1 | TOPLESS OS=Eragrostis curvula OX=38414 GN=EJB05_07303 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology