Basic Information
Locus ID:
gene-QOZ80_3AG0240350
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 41708044 | 41709387 | - | gene-QOZ80_3AG0240350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.13 | 47,738.60 Da | 39.47 | 104.88 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 38 | 79 | 2.71354E-23 | - |
| Pfam | PF04564 | U-box domain | 34 | 105 | 2.5E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 29 | 108 | 8.39E-29 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 151 | 411 | 3.32E-16 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 106 | 1.6E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 134 | 426 | 6.5E-14 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 37 | 100 | 9.7E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 33 | 107 | 36.543354 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_002465578.1 | U-box domain-containing protein 21 [Sorghum bicolor] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811M3W6 | RING-type E3 ubiquitin transferase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS1085 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology